Variant report

Variant	rs12126743
Chromosome Location	chr1:56386755-56386756
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12133421	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12144400	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818340	chr1:56359741-56408597	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs12126743	FGGY	cis	cerebellum	SCAN
rs12126743	FCRLB	trans	cerebellum	SCAN
rs12126743	CPT2	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56382600-56393400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:56382800-56392800	Weak transcription	Fetal Lung	lung
3	chr1:56383000-56393400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr1:56386200-56386800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:56386200-56386800	Enhancers	Esophagus	oesophagus
6	chr1:56386200-56387600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr1:56386400-56386800	Enhancers	Placenta	Placenta
8	chr1:56386400-56387600	Enhancers	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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