Variant report

Variant	rs12133421
Chromosome Location	chr1:56403690-56403691
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12126743	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12144400	0.97[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818340	chr1:56359741-56408597	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56398400-56404000	Weak transcription	Fetal Lung	lung
2	chr1:56402000-56416800	Weak transcription	Aorta	Aorta
3	chr1:56403200-56406200	Enhancers	Fetal Muscle Leg	muscle
4	chr1:56403400-56404800	Enhancers	Stomach Smooth Muscle	stomach
5	chr1:56403400-56405000	Enhancers	Fetal Muscle Trunk	muscle
6	chr1:56403400-56405000	Enhancers	Ovary	ovary
7	chr1:56403600-56404200	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr1:56403600-56404400	Enhancers	Esophagus	oesophagus
9	chr1:56403600-56404600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:56403600-56404800	Enhancers	Left Ventricle	heart
11	chr1:56403600-56404800	Enhancers	Right Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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