Variant report
| Variant | rs12126769 |
|---|---|
| Chromosome Location | chr1:209475759-209475760 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:209467592..209471534-chr1:209473372..209476439,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs12064516 | 0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12116965 | 0.94[EUR][1000 genomes] |
| rs12119349 | 1.00[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs12119464 | 1.00[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs12119465 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12120032 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12120757 | 0.80[EUR][1000 genomes] |
| rs12121931 | 0.80[EUR][1000 genomes] |
| rs12124710 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12125098 | 1.00[CEU][hapmap] |
| rs12125358 | 0.80[EUR][1000 genomes] |
| rs12126305 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12128640 | 1.00[CEU][hapmap];0.94[EUR][1000 genomes] |
| rs12135244 | 0.90[EUR][1000 genomes] |
| rs12136870 | 0.86[EUR][1000 genomes] |
| rs12137134 | 0.96[EUR][1000 genomes] |
| rs12137788 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12139847 | 0.90[EUR][1000 genomes] |
| rs12140172 | 1.00[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs12140436 | 1.00[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs12140751 | 0.84[EUR][1000 genomes] |
| rs12144443 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12144663 | 1.00[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs12144725 | 1.00[CEU][hapmap] |
| rs12145008 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12145858 | 0.94[EUR][1000 genomes] |
| rs6668608 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6689812 | 0.83[AFR][1000 genomes] |
| rs74155466 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs74155471 | 0.94[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832481 | chr1:209371276-209540333 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv832492 | chr1:209383771-209589312 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:209467200-209475800 | Weak transcription | Fetal Lung | lung |
| 2 | chr1:209474600-209477200 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
