Variant report

Variant	rs6668608
Chromosome Location	chr1:209503233-209503234
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:209501366..209503454-chr1:209524824..209527553,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12064516	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12116965	0.94[EUR][1000 genomes]
rs12119349	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs12119464	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs12119465	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12120032	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12120757	0.80[EUR][1000 genomes]
rs12121931	0.80[EUR][1000 genomes]
rs12124710	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12125098	1.00[CEU][hapmap]
rs12125358	0.80[EUR][1000 genomes]
rs12126305	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12126769	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12128640	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs12135244	0.90[EUR][1000 genomes]
rs12136870	0.86[EUR][1000 genomes]
rs12137134	0.96[EUR][1000 genomes]
rs12137788	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12139847	0.90[EUR][1000 genomes]
rs12140172	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs12140436	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs12140751	0.84[EUR][1000 genomes]
rs12144443	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12144663	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs12144725	1.00[CEU][hapmap]
rs12145008	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12145858	0.94[EUR][1000 genomes]
rs13375349	1.00[JPT][hapmap]
rs1354848	0.87[AFR][1000 genomes]
rs17014330	0.81[AFR][1000 genomes]
rs41274824	0.87[AFR][1000 genomes]
rs58445036	0.89[AFR][1000 genomes]
rs6678908	0.82[AFR][1000 genomes]
rs74155466	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74155471	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832481	chr1:209371276-209540333	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832492	chr1:209383771-209589312	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209500600-209505800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links