Variant report

Variant	rs58445036
Chromosome Location	chr1:209506010-209506011
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12145008	0.89[AFR][1000 genomes]
rs1354848	0.99[AFR][1000 genomes]
rs17014330	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41274824	0.96[AFR][1000 genomes]
rs6661305	0.88[AFR][1000 genomes]
rs6668608	0.89[AFR][1000 genomes]
rs6678908	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832481	chr1:209371276-209540333	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832492	chr1:209383771-209589312	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209505600-209506200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr1:209505800-209506200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
3	chr1:209505800-209506200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr1:209505800-209506200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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