Variant report

Variant	rs41274824
Chromosome Location	chr1:209501687-209501688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11800822	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12145008	0.87[AFR][1000 genomes]
rs1354848	0.95[AFR][1000 genomes]
rs17014178	1.00[EUR][1000 genomes]
rs17014186	1.00[EUR][1000 genomes]
rs17014330	0.85[AFR][1000 genomes]
rs17014360	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17014368	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17014373	1.00[EUR][1000 genomes]
rs55892452	1.00[EUR][1000 genomes]
rs58445036	0.96[AFR][1000 genomes]
rs6661305	0.84[AFR][1000 genomes]
rs6668608	0.87[AFR][1000 genomes]
rs6678908	0.89[AFR][1000 genomes]
rs74155476	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832481	chr1:209371276-209540333	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832492	chr1:209383771-209589312	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209500200-209502200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:209500200-209502200	Enhancers	Fetal Stomach	stomach
3	chr1:209500600-209505800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:209501200-209502200	Enhancers	Colon Smooth Muscle	Colon
5	chr1:209501600-209502000	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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