Variant report
Variant | rs17014178 |
---|---|
Chromosome Location | chr1:209415744-209415745 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr1:209414000..209416153-chr1:209437703..209440294,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11800822 | 1.00[EUR][1000 genomes] |
rs17014159 | 0.89[YRI][hapmap];0.81[AFR][1000 genomes] |
rs17014186 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs17014193 | 0.89[YRI][hapmap] |
rs17014360 | 1.00[EUR][1000 genomes] |
rs17014368 | 1.00[EUR][1000 genomes] |
rs17014373 | 1.00[EUR][1000 genomes] |
rs1933607 | 0.89[YRI][hapmap];0.81[AFR][1000 genomes] |
rs1933608 | 0.81[AFR][1000 genomes] |
rs2788152 | 0.89[YRI][hapmap] |
rs41274824 | 1.00[EUR][1000 genomes] |
rs55691593 | 0.90[ASN][1000 genomes] |
rs55892452 | 1.00[EUR][1000 genomes] |
rs74155424 | 0.90[ASN][1000 genomes] |
rs74155433 | 0.90[ASN][1000 genomes] |
rs74155476 | 1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv832481 | chr1:209371276-209540333 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv832492 | chr1:209383771-209589312 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
3 | esv1008555 | chr1:209409577-209416496 | Strong transcription Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:209409800-209422200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |