Variant report

Variant	rs55691593
Chromosome Location	chr1:209400810-209400811
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17014178	0.90[ASN][1000 genomes]
rs17014186	0.82[ASN][1000 genomes]
rs74155424	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74155433	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832481	chr1:209371276-209540333	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832492	chr1:209383771-209589312	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209398600-209401400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr1:209398600-209402200	Weak transcription	NHEK	skin
3	chr1:209398600-209402600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:209399400-209401600	Enhancers	Fetal Brain Female	brain
5	chr1:209399800-209401600	Enhancers	Fetal Brain Male	brain
6	chr1:209400000-209401200	Enhancers	H1 Cell Line	embryonic stem cell
7	chr1:209400000-209402600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr1:209400200-209401800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr1:209400200-209402200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr1:209400400-209401800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr1:209400400-209402200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr1:209400600-209401800	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr1:209400800-209401000	Enhancers	Fetal Lung	lung
14	chr1:209400800-209401800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr1:209400800-209402200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr1:209400800-209404800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links