Variant report

Variant	rs74155424
Chromosome Location	chr1:209392453-209392454
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17014178	0.90[ASN][1000 genomes]
rs17014186	0.82[ASN][1000 genomes]
rs55691593	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74155433	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832481	chr1:209371276-209540333	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832492	chr1:209383771-209589312	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209390200-209392800	Weak transcription	Esophagus	oesophagus
2	chr1:209391400-209392800	Enhancers	Dnd41	blood
3	chr1:209391400-209393200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr1:209391400-209394400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:209391600-209393400	Enhancers	NHEK	skin
6	chr1:209392000-209393200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:209392000-209394200	Enhancers	HMEC	breast
8	chr1:209392200-209393400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr1:209392200-209394000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:209392200-209394400	Enhancers	Fetal Brain Male	brain
11	chr1:209392400-209393400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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