Variant report

Variant	rs17014186
Chromosome Location	chr1:209417346-209417347
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11800822	1.00[EUR][1000 genomes]
rs17014159	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs17014178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17014193	0.90[YRI][hapmap]
rs17014360	1.00[EUR][1000 genomes]
rs17014368	1.00[EUR][1000 genomes]
rs17014373	1.00[EUR][1000 genomes]
rs1933607	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs1933608	0.81[AFR][1000 genomes]
rs2788152	0.90[YRI][hapmap]
rs41274824	1.00[EUR][1000 genomes]
rs55691593	0.82[ASN][1000 genomes]
rs55892452	1.00[EUR][1000 genomes]
rs74155424	0.82[ASN][1000 genomes]
rs74155433	0.82[ASN][1000 genomes]
rs74155476	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832481	chr1:209371276-209540333	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832492	chr1:209383771-209589312	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209409800-209422200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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