Variant report
| Variant | rs12128337 |
|---|---|
| Chromosome Location | chr1:56034620-56034621 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10493196 | 0.84[CEU][hapmap];0.86[CHB][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs10789002 | 0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10789003 | 0.81[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs10789004 | 0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10888933 | 0.81[ASN][1000 genomes] |
| rs10888934 | 0.82[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11206620 | 0.80[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs11206622 | 0.82[EUR][1000 genomes] |
| rs11206625 | 0.82[EUR][1000 genomes] |
| rs11206629 | 0.82[EUR][1000 genomes] |
| rs12040862 | 0.80[EUR][1000 genomes] |
| rs12086546 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs12142554 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs12401977 | 0.85[CEU][hapmap];0.82[CHB][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1392128 | 0.81[EUR][1000 genomes] |
| rs1392129 | 0.80[EUR][1000 genomes] |
| rs17112402 | 0.81[CEU][hapmap];0.81[CHB][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs4339898 | 0.81[ASN][1000 genomes] |
| rs61774741 | 0.88[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs61776360 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs6588566 | 0.81[EUR][1000 genomes] |
| rs6669248 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs6675850 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs72667846 | 0.80[ASN][1000 genomes] |
| rs9787362 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv10184 | chr1:55728755-56084833 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:56025800-56038400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
