Variant report

Variant	rs11206620
Chromosome Location	chr1:56024724-56024725
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10493196	0.85[EUR][1000 genomes]
rs10789002	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10789003	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10789004	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10888931	0.92[ASN][1000 genomes]
rs10888933	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10888934	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11206618	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11206622	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12044949	0.92[ASN][1000 genomes]
rs12069408	0.91[ASN][1000 genomes]
rs12086546	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12128185	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12128337	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12142554	0.85[EUR][1000 genomes]
rs12401977	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1499658	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17112402	0.84[EUR][1000 genomes]
rs1875068	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4339898	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4927249	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61774741	0.81[ASN][1000 genomes]
rs61776360	0.85[EUR][1000 genomes]
rs6669248	0.85[EUR][1000 genomes]
rs6675850	0.82[EUR][1000 genomes]
rs72667832	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72667838	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72667846	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9436973	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9787362	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10184	chr1:55728755-56084833	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56011600-56026400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr1:56018600-56025800	Weak transcription	Aorta	Aorta
3	chr1:56020200-56026400	Enhancers	Fetal Heart	heart
4	chr1:56021400-56026600	Enhancers	Fetal Lung	lung
5	chr1:56022000-56025000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr1:56023000-56027000	Enhancers	Fetal Muscle Leg	muscle
7	chr1:56023200-56024800	Enhancers	Right Atrium	heart
8	chr1:56023600-56025200	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr1:56024200-56024800	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr1:56024200-56025200	Enhancers	Left Ventricle	heart
11	chr1:56024200-56026000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr1:56024200-56026000	Enhancers	Ovary	ovary
13	chr1:56024200-56026200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr1:56024200-56026400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:56024200-56026400	Enhancers	NHDF-Ad	bronchial
16	chr1:56024400-56024800	Enhancers	Right Ventricle	heart
17	chr1:56024400-56025800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr1:56024400-56026600	Enhancers	Placenta Amnion	Placenta Amnion
19	chr1:56024600-56025600	Weak transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links