Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10789002	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10789003	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10789004	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10888931	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10888933	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10888934	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11206618	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11206620	0.92[ASN][1000 genomes]
rs11206622	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12069408	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12086546	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12128185	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12401977	0.82[ASN][1000 genomes]
rs1499658	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1875068	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4339898	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4927249	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61774741	0.87[AFR][1000 genomes]
rs72667832	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72667838	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs72667846	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9436973	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9787362	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10184	chr1:55728755-56084833	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv11545	chr1:56002387-56002939	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:55997000-56005400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:56001600-56005400	Weak transcription	Psoas Muscle	Psoas
3	chr1:56002000-56003200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr1:56002200-56005400	Weak transcription	Right Atrium	heart
5	chr1:56002400-56005200	Weak transcription	Fetal Muscle Leg	muscle
6	chr1:56002600-56003600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr1:56002600-56005400	Weak transcription	NHDF-Ad	bronchial
8	chr1:56002600-56005600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr1:56002600-56005600	Weak transcription	Colon Smooth Muscle	Colon
10	chr1:56002600-56007400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr1:56002600-56007600	Weak transcription	Osteobl	bone
12	chr1:56002600-56007800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:56002600-56007800	Weak transcription	NHLF	lung
14	chr1:56002600-56008000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr1:56002800-56007800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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