Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10789002	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10789003	0.88[ASN][1000 genomes]
rs10789004	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10888931	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10888933	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10888934	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11206618	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11206620	0.91[ASN][1000 genomes]
rs11206622	0.84[ASN][1000 genomes]
rs12044949	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12086546	0.81[ASN][1000 genomes]
rs12128185	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12401977	0.81[ASN][1000 genomes]
rs1499658	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1875068	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs356094	0.83[EUR][1000 genomes]
rs4339898	0.88[ASN][1000 genomes]
rs4927249	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72667832	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72667838	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs72667846	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9436973	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9787362	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10184	chr1:55728755-56084833	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:55997000-56002000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr1:55997000-56002600	Enhancers	HepG2	liver
3	chr1:55997000-56005400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:55997800-56002000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:55998000-56002200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:55999400-56001200	Enhancers	Hela-S3	cervix
7	chr1:56000200-56002200	Enhancers	Colon Smooth Muscle	Colon
8	chr1:56000800-56002200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:56000800-56002800	Enhancers	Fetal Intestine Large	intestine
10	chr1:56001000-56002000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr1:56001000-56002000	Weak transcription	Fetal Intestine Small	intestine

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