Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10789002	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10789003	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10789004	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10888931	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10888933	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10888934	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11206618	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11206620	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11206622	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12044949	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12069408	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12086546	0.83[ASN][1000 genomes]
rs12128185	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12401977	0.83[ASN][1000 genomes]
rs1499658	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1875068	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs356094	0.80[EUR][1000 genomes]
rs4339898	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72667832	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72667838	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs72667846	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9436973	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9787362	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10184	chr1:55728755-56084833	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56002600-56007400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr1:56002600-56007600	Weak transcription	Osteobl	bone
3	chr1:56002600-56007800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:56002600-56007800	Weak transcription	NHLF	lung
5	chr1:56002600-56008000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:56002800-56007800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:56004800-56007600	Enhancers	Brain Angular Gyrus	brain
8	chr1:56005200-56007000	Enhancers	Brain Hippocampus Middle	brain
9	chr1:56005400-56007200	Enhancers	Brain Cingulate Gyrus	brain
10	chr1:56005400-56007200	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr1:56005400-56007200	Enhancers	Brain Substantia Nigra	brain
12	chr1:56005600-56007800	Weak transcription	Psoas Muscle	Psoas
13	chr1:56005600-56010400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:56005800-56007000	Enhancers	Brain Anterior Caudate	brain
15	chr1:56006000-56008800	Weak transcription	HSMMtube	muscle
16	chr1:56006200-56007400	Weak transcription	NHDF-Ad	bronchial
17	chr1:56006200-56008000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:56006200-56009400	Enhancers	Muscle Satellite Cultured Cells	--
19	chr1:56006200-56012400	Weak transcription	Colon Smooth Muscle	Colon
20	chr1:56006600-56009400	Enhancers	HSMM	muscle

Quick Search: