Variant report

Variant	rs72667832
Chromosome Location	chr1:56007703-56007704
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10789002	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10789003	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10789004	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10888931	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10888933	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10888934	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11206618	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206620	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11206622	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12044949	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12069408	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12086546	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12128185	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12401977	0.85[ASN][1000 genomes]
rs1499658	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1875068	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4339898	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4927249	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61774741	0.89[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs72667838	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72667846	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9436973	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9787362	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10184	chr1:55728755-56084833	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56002600-56007800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:56002600-56007800	Weak transcription	NHLF	lung
3	chr1:56002600-56008000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:56002800-56007800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:56005600-56007800	Weak transcription	Psoas Muscle	Psoas
6	chr1:56005600-56010400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:56006000-56008800	Weak transcription	HSMMtube	muscle
8	chr1:56006200-56008000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:56006200-56009400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr1:56006200-56012400	Weak transcription	Colon Smooth Muscle	Colon
11	chr1:56006600-56009400	Enhancers	HSMM	muscle
12	chr1:56006800-56009800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:56007000-56011600	Weak transcription	Brain Hippocampus Middle	brain
14	chr1:56007200-56011600	Weak transcription	Brain Substantia Nigra	brain
15	chr1:56007400-56009200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr1:56007400-56009600	Enhancers	NHDF-Ad	bronchial
17	chr1:56007600-56009600	Enhancers	Osteobl	bone

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