Variant report

Variant	rs12129335
Chromosome Location	chr1:71055106-71055107
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11209644	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11209645	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12117620	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12126878	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35890412	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55933100	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56132847	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61776729	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71012600-71059800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:71054000-71059400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr1:71054200-71058400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr1:71054200-71059600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr1:71055000-71055200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links