Variant report

Variant	rs12132378
Chromosome Location	chr1:215041904-215041905
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:215041899-215041949	PANC-1	pancreas:	n/a
2	chr1:215041899-215041949	HAEpiC	amniotic membrane:	n/a
3	chr1:215041899-215041949	GM12878	blood:	n/a
4	chr1:215041899-215041949	HIPEpiC	eye:	n/a
5	chr1:215041899-215041949	Caco-2	colon:	n/a
6	chr1:215041899-215041949	NH-A	brain:	n/a
7	chr1:215041899-215041949	Hepatocyte	liver:	n/a
8	chr1:215041899-215041949	HepG2	liver:	n/a
9	chr1:215041899-215041949	NB4	blood:	n/a
10	chr1:215041899-215041949	K562	blood:	n/a
11	chr1:215041899-215041949	Hela-S3	cervix:	n/a
12	chr1:215041899-215041949	H1-hESC	embryonic stem cell:	embryo
13	chr1:215041899-215041949	SAEC	small airway:	n/a
14	chr1:215041899-215041949	HRPEpiC	eye:	n/a
15	chr1:215041899-215041949	HRE	kidney:	n/a
16	chr1:215041899-215041949	U87	brain:	n/a
17	chr1:215041899-215041949	IMR90	lung:	fetal
18	chr1:215041899-215041949	GM12891	blood:	n/a
19	chr1:215041899-215041949	AoSMC	blood vessel:	n/a
20	chr1:215041899-215041949	HL-60	blood:	n/a
21	chr1:215041899-215041949	AG04450	lung:	fetal
22	chr1:215041899-215041949	SK-N-MC	brain:	n/a
23	chr1:215041899-215041949	MCF10A-Er-Src	breast:	n/a
24	chr1:215041899-215041949	MCF-7	breast:	n/a
25	chr1:215041899-215041949	ProgFib	skin:	n/a
26	chr1:215041899-215041949	HCF	heart:	n/a
27	chr1:215041899-215041949	HPAEpiC	pulmonary alveolar:	n/a
28	chr1:215041899-215041949	CMK	blood:	n/a
29	chr1:215041899-215041949	GM06990	blood:	n/a
30	chr1:215041899-215041949	HCT-116	colon:	n/a
31	chr1:215041899-215041949	SK-N-SH	brain:	n/a
32	chr1:215041899-215041949	HMEC	breast:	n/a
33	chr1:215041899-215041949	Jurkat	blood:	n/a
34	chr1:215041899-215041949	RPTEC	kidney:	n/a
35	chr1:215041899-215041949	BE2_C	brain:	n/a
36	chr1:215041899-215041949	AG04449	skin:	fetal
37	chr1:215041899-215041949	SK-N-SH_RA	brain:	n/a
38	chr1:215041899-215041949	BJ	skin:	n/a
39	chr1:215041899-215041949	PrEC	prostate:	n/a
40	chr1:215041899-215041949	GM12892	blood:	n/a
41	chr1:215041899-215041949	HNPCEpiC	eye:	n/a
42	chr1:215041899-215041949	ovcar-3	ovarian:	n/a
43	chr1:215041899-215041949	HCPEpiC	choroid plexus:	n/a
44	chr1:215041899-215041949	GM19239	blood:	n/a
45	chr1:215041899-215041949	A549	lung:	n/a
46	chr1:215041899-215041949	LNCaP	prostate:	n/a
47	chr1:215041899-215041949	HCM	heart:	n/a
48	chr1:215041899-215041949	HEK293	kidney:	embryo
49	chr1:215041899-215041949	HRCEpiC	kidney:	n/a
50	chr1:215041899-215041949	HEEpiC	esophagus:	n/a

No data

Variant related genes	Relation type
GAPDHP24	CpG island

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11120431	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12120735	0.93[EUR][1000 genomes]
rs12122103	0.98[EUR][1000 genomes]
rs12125500	0.88[EUR][1000 genomes]
rs12128520	0.91[EUR][1000 genomes]
rs12129708	0.93[EUR][1000 genomes]
rs12402856	0.98[EUR][1000 genomes]
rs28473621	0.98[EUR][1000 genomes]
rs28581514	0.98[EUR][1000 genomes]
rs73076218	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873167	chr1:214950361-215116947	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv873168	chr1:214962771-215064388	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv3425597	chr1:215041279-215044877	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links