Variant report

Variant	rs12132407
Chromosome Location	chr1:221844687-221844688
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10449304	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11803842	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11807554	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12118810	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12136282	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12136283	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12136513	0.84[ASN][1000 genomes]
rs12728570	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12758057	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2176690	0.83[ASN][1000 genomes]
rs6685165	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66864883	1.00[ASN][1000 genomes]
rs67079790	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs68170611	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7532154	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7540426	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221841600-221844800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr1:221841600-221848400	Weak transcription	Stomach Mucosa	stomach
3	chr1:221842200-221846000	Enhancers	HMEC	breast
4	chr1:221842600-221845800	Enhancers	NHDF-Ad	bronchial
5	chr1:221842600-221846200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:221842600-221846800	Enhancers	HSMM	muscle
7	chr1:221843000-221845600	Enhancers	Osteobl	bone
8	chr1:221843000-221846000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:221843000-221846400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:221843000-221846800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr1:221843000-221847600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr1:221843600-221847800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr1:221844000-221844800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr1:221844000-221845400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr1:221844600-221845000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links