Variant report

Variant	rs68170611
Chromosome Location	chr1:221841493-221841494
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:221816826..221819415-chr1:221839496..221842221,2	MCF-7	breast:
2	chr1:221826366..221828507-chr1:221841172..221843520,2	MCF-7	breast:
3	chr1:221840278..221843127-chr1:221844989..221847688,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10449304	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11803842	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11807554	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12118810	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12132407	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12136282	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12136283	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12136513	0.84[ASN][1000 genomes]
rs12728570	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12758057	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2176690	0.83[ASN][1000 genomes]
rs6685165	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66864883	1.00[ASN][1000 genomes]
rs67079790	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7532154	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7540426	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873200	chr1:221644180-221843191	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221840400-221841600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:221840400-221841600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:221840400-221841600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr1:221840400-221841600	Enhancers	NHDF-Ad	bronchial
5	chr1:221840400-221841800	Enhancers	HMEC	breast
6	chr1:221840600-221841600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:221840600-221841600	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr1:221840600-221841600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr1:221840600-221841600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:221840600-221841600	Enhancers	Stomach Mucosa	stomach
11	chr1:221840600-221841600	Enhancers	Hela-S3	cervix
12	chr1:221840600-221841600	Enhancers	K562	blood
13	chr1:221840600-221841600	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr1:221840600-221841600	Enhancers	NHEK	skin
15	chr1:221840800-221841600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr1:221841200-221841600	Enhancers	GM12878-XiMat	blood
17	chr1:221841200-221842600	Weak transcription	HSMM	muscle
18	chr1:221841200-221843600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr1:221841400-221842600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr1:221841400-221843000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr1:221841400-221843000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr1:221841400-221843000	Weak transcription	Osteobl	bone

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