Variant report

Variant	rs12135873
Chromosome Location	chr1:212069335-212069336
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12118567	0.88[CHB][hapmap];1.00[YRI][hapmap]
rs12121937	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[TSI][hapmap];0.90[EUR][1000 genomes]
rs12126358	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12127709	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes]
rs12129884	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes]
rs12129898	0.88[CHB][hapmap];1.00[YRI][hapmap]
rs12134985	0.93[EUR][1000 genomes]
rs12139898	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12143191	0.88[CHB][hapmap]
rs12144899	0.86[CHB][hapmap];1.00[YRI][hapmap]
rs17018373	0.86[CHB][hapmap];1.00[YRI][hapmap]
rs3292	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes]
rs7534669	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762218	chr1:212046447-212087682	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212063200-212070200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:212063200-212070200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr1:212063200-212074600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:212065800-212069400	Enhancers	Fetal Intestine Large	intestine
5	chr1:212066000-212069600	Enhancers	Fetal Intestine Small	intestine
6	chr1:212066800-212070000	Weak transcription	Fetal Muscle Leg	muscle
7	chr1:212068600-212069400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr1:212068600-212069400	Enhancers	K562	blood
9	chr1:212068600-212070400	Enhancers	A549	lung
10	chr1:212068800-212069600	Enhancers	Pancreas	Pancrea
11	chr1:212069000-212069400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:212069200-212071400	Enhancers	HepG2	liver
13	chr1:212069200-212075200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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