Variant report

Variant	rs12139898
Chromosome Location	chr1:212094020-212094021
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:212092565..212095366-chr1:212097974..212099950,2	MCF-7	breast:
2	chr1:212085059..212088251-chr1:212089399..212094888,5	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12118567	0.89[CHB][hapmap];1.00[YRI][hapmap]
rs12121937	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12127709	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes]
rs12129884	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes]
rs12129898	0.89[CHB][hapmap];1.00[YRI][hapmap]
rs12134985	0.91[EUR][1000 genomes]
rs12135873	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12143191	0.89[CHB][hapmap]
rs12144899	0.88[CHB][hapmap];1.00[YRI][hapmap]
rs17018373	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2358384	0.85[ASN][1000 genomes]
rs3292	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes]
rs7534669	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212084800-212113000	Weak transcription	Brain Anterior Caudate	brain
2	chr1:212085400-212101800	Weak transcription	Colonic Mucosa	Colon
3	chr1:212088000-212099200	Enhancers	Fetal Intestine Large	intestine
4	chr1:212088600-212099200	Enhancers	Fetal Intestine Small	intestine
5	chr1:212090200-212094600	Enhancers	Hela-S3	cervix
6	chr1:212090400-212094600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:212090600-212094400	Enhancers	Osteobl	bone
8	chr1:212090600-212094600	Enhancers	Duodenum Mucosa	Duodenum
9	chr1:212090600-212094800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr1:212090800-212094400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr1:212090800-212094400	Enhancers	Pancreas	Pancrea
12	chr1:212090800-212094400	Enhancers	Stomach Mucosa	stomach
13	chr1:212090800-212094400	Enhancers	NHLF	lung
14	chr1:212090800-212094600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr1:212090800-212095400	Enhancers	Adipose Nuclei	Adipose
16	chr1:212091000-212094600	Enhancers	NHDF-Ad	bronchial
17	chr1:212091000-212102200	Weak transcription	Esophagus	oesophagus
18	chr1:212092000-212096400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr1:212092000-212096600	Weak transcription	HMEC	breast
20	chr1:212092200-212094200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr1:212092600-212094400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr1:212093000-212098400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr1:212093400-212094400	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr1:212093400-212094400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr1:212093400-212094400	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr1:212093400-212094400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr1:212093400-212094400	Enhancers	Brain Hippocampus Middle	brain
28	chr1:212093400-212094400	Enhancers	Fetal Muscle Leg	muscle
29	chr1:212093400-212094400	Enhancers	Ovary	ovary
30	chr1:212093400-212094400	Flanking Active TSS	A549	lung
31	chr1:212093400-212094600	Enhancers	Fetal Muscle Trunk	muscle
32	chr1:212093600-212094200	Enhancers	Small Intestine	intestine
33	chr1:212093600-212095400	Enhancers	Liver	Liver
34	chr1:212093800-212094400	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr1:212093800-212098200	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr1:212093800-212101800	Weak transcription	Gastric	stomach
37	chr1:212094000-212094200	Enhancers	HepG2	liver
38	chr1:212094000-212095400	Enhancers	Right Atrium	heart

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