Variant report

Variant	rs12136025
Chromosome Location	chr1:165343101-165343102
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12136601	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28502486	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56375656	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6665237	0.86[AMR][1000 genomes]
rs6665572	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165334400-165344400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:165337200-165344600	Weak transcription	Right Atrium	heart
3	chr1:165340800-165345200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:165341800-165344600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:165341800-165344600	Weak transcription	Fetal Lung	lung
6	chr1:165342200-165344600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr1:165342200-165345000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:165342800-165343800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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