Variant report

Variant	rs12136596
Chromosome Location	chr1:168324680-168324681
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10489210	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10800356	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10918873	0.97[ASN][1000 genomes]
rs12034832	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12123087	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12128782	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12137679	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12403490	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12409703	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12566982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1569467	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16860447	0.83[CHB][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs1977060	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2268556	0.89[ASN][1000 genomes]
rs2268557	0.84[CHB][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs2268559	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2268560	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2900726	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4656583	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6427127	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6670176	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6697421	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7532903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7555108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs760685	0.83[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831825	chr1:168179175-168353062	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1002007	chr1:168179463-168375973	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168318400-168329200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr1:168318400-168329400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr1:168318400-168329400	Weak transcription	Colon Smooth Muscle	Colon
4	chr1:168323600-168325400	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr1:168323800-168324800	Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr1:168323800-168325400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr1:168323800-168325600	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr1:168324000-168324800	Active TSS	Placenta	Placenta
9	chr1:168324000-168325200	Active TSS	H1 Cell Line	embryonic stem cell
10	chr1:168324000-168325400	Active TSS	iPS-18 Cell Line	embryonic stem cell
11	chr1:168324000-168325600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr1:168324200-168324800	Active TSS	HUES48 Cell Line	embryonic stem cell
13	chr1:168324200-168324800	Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr1:168324200-168325000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr1:168324600-168326000	Active TSS	HepG2	liver

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