Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:168301498..168303365-chr1:168306910..168308867,2	K562	blood:
2	chr1:168301498..168304176-chr1:168306880..168308410,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10489210	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10800356	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10918873	0.85[ASN][1000 genomes]
rs12034832	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12123087	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12128782	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12136596	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12403490	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12409703	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12566982	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1569467	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1977060	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2268559	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2268560	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2900726	0.85[AMR][1000 genomes]
rs4656583	0.80[AMR][1000 genomes]
rs6427127	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6670176	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6697421	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7532903	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7555108	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831825	chr1:168179175-168353062	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1002007	chr1:168179463-168375973	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168283800-168312800	Weak transcription	Spleen	Spleen
2	chr1:168291000-168311800	Weak transcription	Ovary	ovary
3	chr1:168294400-168310800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr1:168301600-168309800	Weak transcription	K562	blood
5	chr1:168302200-168311200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr1:168305200-168310800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr1:168308000-168308400	Enhancers	Primary T helper naive cells from peripheral blood	blood

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