Variant report

Variant	rs12136874
Chromosome Location	chr1:186577008-186577009
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:186575620..186577383-chr1:186631435..186633381,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10489400	0.92[EUR][1000 genomes]
rs10737268	0.92[EUR][1000 genomes]
rs10752972	0.92[EUR][1000 genomes]
rs10752975	0.92[EUR][1000 genomes]
rs10798058	0.92[EUR][1000 genomes]
rs12088741	0.92[EUR][1000 genomes]
rs12124257	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12725481	0.92[EUR][1000 genomes]
rs12738146	0.92[EUR][1000 genomes]
rs1883272	0.92[EUR][1000 genomes]
rs1997673	0.92[EUR][1000 genomes]
rs2064131	0.92[EUR][1000 genomes]
rs2064132	0.92[EUR][1000 genomes]
rs2142817	0.92[EUR][1000 genomes]
rs2142818	0.92[EUR][1000 genomes]
rs2179225	0.92[EUR][1000 genomes]
rs2205952	0.92[EUR][1000 genomes]
rs2223328	0.92[EUR][1000 genomes]
rs2383532	0.87[EUR][1000 genomes]
rs2891253	0.92[EUR][1000 genomes]
rs2891254	0.92[EUR][1000 genomes]
rs3108517	1.00[AMR][1000 genomes]
rs3115751	1.00[AMR][1000 genomes]
rs3119332	1.00[AMR][1000 genomes]
rs3119333	1.00[AMR][1000 genomes]
rs3119334	1.00[AMR][1000 genomes]
rs3131549	1.00[AMR][1000 genomes]
rs3131553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3955272	0.92[EUR][1000 genomes]
rs4140563	0.92[EUR][1000 genomes]
rs4140564	0.92[EUR][1000 genomes]
rs4650702	0.92[EUR][1000 genomes]
rs4651325	0.92[EUR][1000 genomes]
rs4651326	0.92[EUR][1000 genomes]
rs6425045	0.92[EUR][1000 genomes]
rs6425046	0.92[EUR][1000 genomes]
rs6425047	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs66476634	0.92[EUR][1000 genomes]
rs6656831	0.92[EUR][1000 genomes]
rs6669569	0.92[EUR][1000 genomes]
rs6681138	0.92[EUR][1000 genomes]
rs7517157	0.92[EUR][1000 genomes]
rs7521061	0.92[EUR][1000 genomes]
rs7522771	0.92[EUR][1000 genomes]
rs7537367	0.92[EUR][1000 genomes]
rs7552522	0.92[EUR][1000 genomes]
rs760707	0.92[EUR][1000 genomes]
rs760708	0.92[EUR][1000 genomes]
rs760709	0.92[EUR][1000 genomes]
rs988904	0.92[EUR][1000 genomes]
rs988905	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004481	chr1:186095854-186750968	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv535223	chr1:186095854-186750968	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv832059	chr1:186464932-186639125	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2762854	chr1:186547101-186847574	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv872590	chr1:186557453-187500338	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186575600-186587400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:186575800-186578200	Weak transcription	Colon Smooth Muscle	Colon
3	chr1:186575800-186579200	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr1:186577000-186577400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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