Variant report
Variant | rs2142817 |
---|---|
Chromosome Location | chr1:186716561-186716562 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr1:186709728..186711372-chr1:186715180..186717374,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10489400 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10737268 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10752972 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10752975 | 1.00[EUR][1000 genomes] |
rs10798058 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12088741 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12124257 | 1.00[EUR][1000 genomes] |
rs12136874 | 0.92[EUR][1000 genomes] |
rs12725481 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12738146 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1883272 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1997673 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2064131 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2064132 | 1.00[EUR][1000 genomes] |
rs2142818 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2179225 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2205952 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2223328 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2383532 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs2891253 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2891254 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs3955272 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs4140563 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs4140564 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs4650702 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs4651325 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs4651326 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6425045 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6425046 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6425047 | 1.00[EUR][1000 genomes] |
rs66476634 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6656831 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6669569 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6681138 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7517157 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7521061 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7522771 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7537367 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7552522 | 1.00[EUR][1000 genomes] |
rs760707 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs760708 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs760709 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs988904 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs988905 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1004481 | chr1:186095854-186750968 | Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 60 gene(s) | inside rSNPs | diseases |
2 | nsv535223 | chr1:186095854-186750968 | Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 60 gene(s) | inside rSNPs | diseases |
3 | esv2762854 | chr1:186547101-186847574 | Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
4 | nsv872590 | chr1:186557453-187500338 | Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
5 | nsv466261 | chr1:186652395-186742947 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
6 | nsv548405 | chr1:186652395-186742947 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:186715400-186716600 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
2 | chr1:186715600-186730800 | Weak transcription | Pancreatic Islets | Pancreatic Islet |