Variant report

Variant	rs12140609
Chromosome Location	chr1:102426749-102426750
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11591058	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12035347	0.85[ASN][1000 genomes]
rs12118113	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12120249	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12745544	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1336794	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1415092	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1415095	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17434817	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2339204	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28541803	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2879370	1.00[CHB][hapmap]
rs34650715	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35337065	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908204	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908207	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6577293	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6577295	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7550681	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs945642	1.00[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522921	chr1:102170295-102876392	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1004240	chr1:102360610-102428344	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1012856	chr1:102360610-102438432	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv520768	chr1:102366140-102435130	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv462628	chr1:102376258-102473559	Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv546900	chr1:102376258-102473559	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv870285	chr1:102404415-102439185	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:102425200-102427200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr1:102425400-102427000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr1:102426000-102427200	Weak transcription	Dnd41	blood

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