Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11591058	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12035347	0.85[ASN][1000 genomes]
rs12118113	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12120249	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12140609	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12745544	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1336794	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1415092	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1415095	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17434817	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2339204	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28541803	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2879370	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34650715	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35337065	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908204	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908207	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6577295	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7550681	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs945642	0.94[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522921	chr1:102170295-102876392	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1012856	chr1:102360610-102438432	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv520768	chr1:102366140-102435130	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv462628	chr1:102376258-102473559	Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv546900	chr1:102376258-102473559	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv870285	chr1:102404415-102439185	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6577293	OLFM3	cis	cerebellum	SCAN
rs6577293	KRTAP13-4	trans	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:102429000-102431400	Enhancers	Dnd41	blood
2	chr1:102429600-102432000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:102429800-102432400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:102430400-102430800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr1:102430400-102430800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr1:102430400-102431000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr1:102430400-102432000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr1:102430600-102431000	Enhancers	Fetal Stomach	stomach

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