Variant report

Variant	rs12141175
Chromosome Location	chr1:84981669-84981670
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10874450	1.00[CEU][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11163977	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11163978	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11163983	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11163984	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11163989	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11163995	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11163997	1.00[EUR][1000 genomes]
rs11163998	1.00[YRI][hapmap]
rs12067077	1.00[CEU][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12075688	1.00[YRI][hapmap]
rs12077012	1.00[EUR][1000 genomes]
rs12092954	0.82[EUR][1000 genomes]
rs12093101	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs12134893	0.95[EUR][1000 genomes]
rs12137560	0.95[EUR][1000 genomes]
rs12144912	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1803276	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84973000-85003200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:84973200-84982200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr1:84973200-84982200	Weak transcription	NHDF-Ad	bronchial
4	chr1:84973200-85003200	Weak transcription	Adipose Nuclei	Adipose
5	chr1:84973400-84991600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:84973400-84993800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:84973400-84994400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:84973400-84995200	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr1:84973400-85002000	Weak transcription	Primary T cells from cord blood	blood
10	chr1:84973600-84984600	Weak transcription	Fetal Heart	heart
11	chr1:84974000-84982200	Weak transcription	Aorta	Aorta
12	chr1:84974200-84991400	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr1:84975200-85019600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr1:84975800-85030200	Weak transcription	Fetal Intestine Small	intestine
15	chr1:84977600-84991600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr1:84979600-84994400	Weak transcription	Primary B cells from cord blood	blood
17	chr1:84981600-85012200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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