Variant report

Variant	rs12144912
Chromosome Location	chr1:84940299-84940300
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10874450	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11163977	0.95[EUR][1000 genomes]
rs11163978	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11163983	0.95[EUR][1000 genomes]
rs11163984	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11163989	0.95[EUR][1000 genomes]
rs11163995	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11163997	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12067077	0.95[EUR][1000 genomes]
rs12077012	0.95[EUR][1000 genomes]
rs12092954	0.86[EUR][1000 genomes]
rs12093101	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12134893	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12137560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12141175	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs55865032	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830437	chr1:84837524-85001269	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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