The 2.0 version of rSNPBase

Variant report

Variant rs12142676
Chromosome Location chr1:184387502-184387503
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:65 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:184359600-184391200 Weak transcription Duodenum Mucosa Duodenum
2 chr1:184378000-184395600 Weak transcription Brain Germinal Matrix brain
3 chr1:184378200-184402400 Weak transcription Fetal Lung lung
4 chr1:184378400-184388200 Weak transcription Fetal Muscle Leg muscle
5 chr1:184378400-184394200 Weak transcription Fetal Intestine Small intestine
6 chr1:184378400-184397400 Weak transcription Ovary ovary
7 chr1:184378600-184388800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr1:184378800-184388200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
9 chr1:184378800-184388200 Weak transcription NHDF-Ad bronchial
10 chr1:184378800-184389000 Weak transcription Muscle Satellite Cultured Cells --
11 chr1:184379000-184393000 Weak transcription Fetal Intestine Large intestine
12 chr1:184383600-184394200 Weak transcription Spleen Spleen
13 chr1:184383800-184412400 Weak transcription Fetal Stomach stomach
14 chr1:184384000-184389600 Enhancers Breast Myoepithelial Primary Cells Breast
15 chr1:184384400-184392000 Enhancers Skeletal Muscle Male skeletal muscle
16 chr1:184384600-184389800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
17 chr1:184385600-184387600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
18 chr1:184385800-184389200 Enhancers Psoas Muscle Psoas
19 chr1:184385800-184389800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
20 chr1:184385800-184392000 Enhancers Skeletal Muscle Female skeletal muscle
21 chr1:184386000-184389000 Weak transcription Rectal Smooth Muscle rectum
22 chr1:184386200-184387800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
23 chr1:184386200-184387800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
24 chr1:184386200-184388200 Enhancers Right Atrium heart
25 chr1:184386200-184388400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
26 chr1:184386200-184388400 Weak transcription Rectal Mucosa Donor 31 rectum
27 chr1:184386200-184388600 Weak transcription NHLF lung
28 chr1:184386200-184390000 Enhancers Primary hematopoietic stem cells short term culture blood
29 chr1:184386200-184391000 Weak transcription H9 Cell Line embryonic stem cell
30 chr1:184386400-184388800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
31 chr1:184386400-184389400 Enhancers Primary monocytes fromperipheralblood blood
32 chr1:184386400-184390200 Enhancers HMEC breast
33 chr1:184386400-184391200 Weak transcription Small Intestine intestine
34 chr1:184386400-184392000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
35 chr1:184386400-184393600 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
36 chr1:184386600-184387600 Enhancers Right Ventricle heart
37 chr1:184386600-184387800 Enhancers Monocytes-CD14+_RO01746 blood
38 chr1:184386600-184388600 Weak transcription Cortex derived primary cultured neurospheres brain
39 chr1:184386600-184388600 Enhancers NHEK skin
40 chr1:184386600-184390800 Weak transcription HUES6 Cell Line embryonic stem cell
41 chr1:184386600-184390800 Weak transcription iPS-18 Cell Line embryonic stem cell
42 chr1:184386600-184391800 Weak transcription Duodenum Smooth Muscle Duodenum
43 chr1:184386600-184393200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
44 chr1:184386600-184393600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
45 chr1:184386800-184389200 Enhancers Left Ventricle heart
46 chr1:184387000-184387600 Enhancers Esophagus oesophagus
47 chr1:184387000-184387600 Enhancers Lung lung
48 chr1:184387000-184388400 Weak transcription HUES64 Cell Line embryonic stem cell
49 chr1:184387000-184389200 Enhancers Primary Natural Killer cells fromperipheralblood blood
50 chr1:184387000-184389400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015