The 2.0 version of rSNPBase

Variant report

Variant rs2224029
Chromosome Location chr1:184397889-184397890
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:184378200-184402400 Weak transcription Fetal Lung lung
2 chr1:184383800-184412400 Weak transcription Fetal Stomach stomach
3 chr1:184387000-184400200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
4 chr1:184387200-184403400 Weak transcription Aorta Aorta
5 chr1:184388000-184400000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
6 chr1:184389200-184399800 Weak transcription A549 lung
7 chr1:184389400-184399400 Weak transcription NHLF lung
8 chr1:184390600-184401600 Weak transcription Primary hematopoietic stem cells short term culture blood
9 chr1:184390600-184422400 Weak transcription Cortex derived primary cultured neurospheres brain
10 chr1:184391400-184398000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr1:184392200-184408200 Weak transcription Esophagus oesophagus
12 chr1:184392400-184398200 Weak transcription Duodenum Smooth Muscle Duodenum
13 chr1:184394600-184398600 Weak transcription HMEC breast
14 chr1:184394800-184398000 Weak transcription Lung lung
15 chr1:184395000-184402200 Weak transcription Pancreas Pancrea
16 chr1:184395000-184405600 Weak transcription Fetal Intestine Small intestine
17 chr1:184395200-184405000 Weak transcription Fetal Intestine Large intestine
18 chr1:184395400-184408000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
19 chr1:184395600-184398000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr1:184395600-184398000 Weak transcription Small Intestine intestine
21 chr1:184395800-184398000 Weak transcription Fetal Heart heart
22 chr1:184395800-184405600 Weak transcription Rectal Mucosa Donor 29 rectum
23 chr1:184396000-184412800 Weak transcription Fetal Muscle Leg muscle
24 chr1:184396200-184402400 Weak transcription Stomach Mucosa stomach
25 chr1:184396200-184412800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
26 chr1:184396200-184418800 Weak transcription NHEK skin
27 chr1:184396200-184419000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr1:184396400-184402200 Weak transcription H1 Cell Line embryonic stem cell
29 chr1:184396400-184430000 Weak transcription Spleen Spleen
30 chr1:184396800-184398800 Enhancers Breast Myoepithelial Primary Cells Breast
31 chr1:184396800-184404800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
32 chr1:184397000-184402200 Weak transcription iPS-15b Cell Line embryonic stem cell
33 chr1:184397000-184402200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
34 chr1:184397200-184398000 Weak transcription Skeletal Muscle Female skeletal muscle
35 chr1:184397200-184402200 Weak transcription Skeletal Muscle Male skeletal muscle
36 chr1:184397600-184398200 Enhancers Psoas Muscle Psoas
37 chr1:184397800-184398200 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
38 chr1:184397800-184398400 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
39 chr1:184397800-184398400 Enhancers Left Ventricle heart
40 chr1:184397800-184398400 Genic enhancers Rectal Mucosa Donor 31 rectum
41 chr1:184397800-184398400 Enhancers Right Ventricle heart
42 chr1:184397800-184398400 Genic enhancers Sigmoid Colon Sigmoid Colon
43 chr1:184397800-184398600 Enhancers Right Atrium heart

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Last update: Aug 31, 2015