Variant report

Variant	rs12142995
Chromosome Location	chr1:94903093-94903094
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94901652..94904489-chr1:94917080..94919308,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1023058	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11165143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11165150	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12080254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12094329	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12404710	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12750904	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1415758	0.83[ASN][1000 genomes]
rs4148045	0.92[ASN][1000 genomes]
rs4148046	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4148051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4424519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4579764	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6656819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6660167	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs724829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7528491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871097	chr1:94850443-94941890	Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94885200-94907200	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr1:94885200-94915000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:94888200-94905400	Weak transcription	Right Atrium	heart
4	chr1:94888400-94914600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:94889200-94914200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr1:94892000-94905000	Weak transcription	HMEC	breast
7	chr1:94894200-94903200	Weak transcription	Osteobl	bone
8	chr1:94894600-94914800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr1:94895400-94904200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr1:94895600-94904000	Weak transcription	Colonic Mucosa	Colon
11	chr1:94895600-94905400	Weak transcription	Gastric	stomach
12	chr1:94895600-94905400	Weak transcription	Left Ventricle	heart
13	chr1:94895800-94905400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:94899200-94914800	Weak transcription	HSMM	muscle
15	chr1:94899400-94905000	Weak transcription	Pancreas	Pancrea
16	chr1:94899800-94903400	Strong transcription	Fetal Thymus	thymus
17	chr1:94900600-94903800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr1:94900600-94903800	Weak transcription	Thymus	Thymus
19	chr1:94900800-94904400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr1:94901000-94903800	Weak transcription	HepG2	liver
21	chr1:94901200-94903800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr1:94901400-94903400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr1:94901400-94903600	ZNF genes & repeats	Dnd41	blood
24	chr1:94901800-94911200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr1:94902400-94903200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
26	chr1:94902400-94903600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr1:94902400-94904200	Weak transcription	Stomach Mucosa	stomach
28	chr1:94902600-94903200	ZNF genes & repeats	Liver	Liver
29	chr1:94902600-94903200	ZNF genes & repeats	Fetal Kidney	kidney
30	chr1:94902600-94903400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
31	chr1:94902800-94903400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr1:94902800-94904000	Weak transcription	Primary T cells from cord blood	blood
33	chr1:94902800-94904800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
34	chr1:94903000-94903800	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr1:94903000-94907800	Weak transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links