Variant report

Variant	rs4579764
Chromosome Location	chr1:94915990-94915991
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1023058	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11165143	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11165150	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12080254	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12094329	0.98[ASN][1000 genomes]
rs12142995	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12404710	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12750904	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1415758	0.84[ASN][1000 genomes]
rs4148045	0.91[ASN][1000 genomes]
rs4148046	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4148051	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4424519	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6656819	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6660167	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs724829	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7528491	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871097	chr1:94850443-94941890	Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94908600-94918800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:94910600-94928600	Weak transcription	A549	lung
3	chr1:94913600-94916000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr1:94913800-94974200	Weak transcription	Psoas Muscle	Psoas
5	chr1:94914200-94916000	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
6	chr1:94914200-94917600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr1:94914200-94917800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
8	chr1:94914200-94917800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
9	chr1:94914200-94917800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
10	chr1:94914200-94918000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
11	chr1:94914200-94918000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
12	chr1:94914200-94918800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr1:94914200-94951800	Weak transcription	Brain Angular Gyrus	brain
14	chr1:94914400-94916000	ZNF genes & repeats	Fetal Muscle Leg	muscle
15	chr1:94914400-94916400	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
16	chr1:94914400-94916400	ZNF genes & repeats	Fetal Intestine Small	intestine
17	chr1:94914400-94916400	ZNF genes & repeats	Thymus	Thymus
18	chr1:94914400-94916600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr1:94914400-94917600	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
20	chr1:94914400-94918000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
21	chr1:94914400-94918000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
22	chr1:94914400-94918000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
23	chr1:94914400-94918200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
24	chr1:94914400-94918200	ZNF genes & repeats	Primary T cells from cord blood	blood
25	chr1:94914400-94918800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr1:94914400-94918800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
27	chr1:94914400-94918800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr1:94914600-94916000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
29	chr1:94914600-94916000	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
30	chr1:94914600-94916000	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
31	chr1:94914600-94916000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr1:94914600-94916000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr1:94914600-94916000	ZNF genes & repeats	Adipose Nuclei	Adipose
34	chr1:94914600-94916000	ZNF genes & repeats	Fetal Thymus	thymus
35	chr1:94914600-94916000	ZNF genes & repeats	Ovary	ovary
36	chr1:94914600-94916200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr1:94914600-94916200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr1:94914600-94916200	ZNF genes & repeats	Aorta	Aorta
39	chr1:94914600-94916400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
40	chr1:94914600-94916400	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
41	chr1:94914600-94916400	ZNF genes & repeats	Fetal Lung	lung
42	chr1:94914600-94916800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr1:94914600-94916800	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
44	chr1:94914600-94917400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr1:94914600-94917600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
46	chr1:94914600-94918000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr1:94914600-94918000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
48	chr1:94914600-94918000	ZNF genes & repeats	Dnd41	blood
49	chr1:94914600-94918800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
50	chr1:94914600-94918800	ZNF genes & repeats	Primary hematopoietic stem cells	blood

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