The 2.0 version of rSNPBase

Variant report

Variant rs12143529
Chromosome Location chr1:77651936-77651937
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:53 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:77616200-77663200 Weak transcription Brain Hippocampus Middle brain
2 chr1:77626000-77662600 Weak transcription Thymus Thymus
3 chr1:77626000-77684200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
4 chr1:77626800-77668000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
5 chr1:77626800-77674800 Weak transcription Ovary ovary
6 chr1:77626800-77676200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
7 chr1:77630800-77652000 Weak transcription Rectal Mucosa Donor 29 rectum
8 chr1:77630800-77660600 Weak transcription Left Ventricle heart
9 chr1:77631800-77660600 Weak transcription Primary T cells fromperipheralblood blood
10 chr1:77634400-77656600 Weak transcription Primary T helper naive cells fromperipheralblood blood
11 chr1:77638200-77662200 Weak transcription Small Intestine intestine
12 chr1:77643400-77669600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
13 chr1:77643600-77663000 Weak transcription Brain Inferior Temporal Lobe brain
14 chr1:77643600-77672600 Weak transcription Fetal Lung lung
15 chr1:77643800-77674400 Weak transcription Psoas Muscle Psoas
16 chr1:77644000-77654800 Weak transcription Primary T regulatory cells fromperipheralblood blood
17 chr1:77644200-77652000 Weak transcription Primary B cells from cord blood blood
18 chr1:77645600-77661600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
19 chr1:77645800-77654600 Weak transcription Primary T killer naive cells fromperipheralblood blood
20 chr1:77646200-77660200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
21 chr1:77648000-77660800 Weak transcription Spleen Spleen
22 chr1:77648400-77684000 Weak transcription Duodenum Smooth Muscle Duodenum
23 chr1:77648600-77652400 Weak transcription Breast Myoepithelial Primary Cells Breast
24 chr1:77648800-77661400 Weak transcription Fetal Muscle Trunk muscle
25 chr1:77649000-77679800 Weak transcription Primary T helper cells PMA-I stimulated --
26 chr1:77649200-77654800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
27 chr1:77649200-77672400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr1:77649600-77652800 Strong transcription Primary T cells from cord blood blood
29 chr1:77649600-77666600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
30 chr1:77649800-77661200 Weak transcription Pancreas Pancrea
31 chr1:77650000-77655200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
32 chr1:77650200-77653000 Strong transcription Stomach Smooth Muscle stomach
33 chr1:77650200-77660600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
34 chr1:77650400-77652200 Weak transcription Monocytes-CD14+_RO01746 blood
35 chr1:77650800-77654600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
36 chr1:77650800-77657800 Weak transcription Primary T helper cells fromperipheralblood blood
37 chr1:77650800-77668800 Weak transcription Adipose Nuclei Adipose
38 chr1:77650800-77672000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr1:77650800-77684200 Weak transcription Sigmoid Colon Sigmoid Colon
40 chr1:77651000-77660400 Weak transcription Primary hematopoietic stem cells blood
41 chr1:77651000-77662600 Weak transcription Skeletal Muscle Male skeletal muscle
42 chr1:77651200-77660000 Weak transcription Primary B cells from peripheral blood blood
43 chr1:77651200-77663200 Weak transcription Duodenum Mucosa Duodenum
44 chr1:77651200-77668000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
45 chr1:77651600-77652000 ZNF genes & repeats Aorta Aorta
46 chr1:77651600-77654600 Weak transcription Dnd41 blood
47 chr1:77651800-77652000 Enhancers Right Ventricle heart
48 chr1:77651800-77652600 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
49 chr1:77651800-77652600 ZNF genes & repeats Fetal Stomach stomach
50 chr1:77651800-77653600 Strong transcription Primary hematopoietic stem cells short term culture blood

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Last update: Aug 31, 2015