Variant report

Variant	rs17100100
Chromosome Location	chr1:77731277-77731278
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:77725962..77727892-chr1:77729929..77731695,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1010061	1.00[ASN][1000 genomes]
rs10443176	1.00[ASN][1000 genomes]
rs10518445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11162275	1.00[ASN][1000 genomes]
rs11162284	1.00[ASN][1000 genomes]
rs11162287	1.00[ASN][1000 genomes]
rs11576574	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12077763	1.00[ASN][1000 genomes]
rs12090495	1.00[ASN][1000 genomes]
rs12119019	1.00[ASN][1000 genomes]
rs12120921	1.00[ASN][1000 genomes]
rs12123535	1.00[ASN][1000 genomes]
rs12126662	1.00[ASN][1000 genomes]
rs12143529	1.00[ASN][1000 genomes]
rs1305486	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1502525	1.00[ASN][1000 genomes]
rs17100141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17100143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17100304	1.00[ASN][1000 genomes]
rs17368950	1.00[ASN][1000 genomes]
rs1827448	1.00[ASN][1000 genomes]
rs1993266	1.00[ASN][1000 genomes]
rs2004962	0.93[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41292260	1.00[ASN][1000 genomes]
rs41292264	1.00[ASN][1000 genomes]
rs4949772	1.00[ASN][1000 genomes]
rs4949773	1.00[ASN][1000 genomes]
rs4949778	1.00[ASN][1000 genomes]
rs56666939	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57267651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57389685	1.00[ASN][1000 genomes]
rs60792794	1.00[ASN][1000 genomes]
rs61782906	1.00[ASN][1000 genomes]
rs6603937	1.00[ASN][1000 genomes]
rs6696605	1.00[ASN][1000 genomes]
rs72683932	1.00[ASN][1000 genomes]
rs72944757	1.00[ASN][1000 genomes]
rs73002568	1.00[ASN][1000 genomes]
rs73004429	1.00[ASN][1000 genomes]
rs73004430	1.00[ASN][1000 genomes]
rs73004434	1.00[ASN][1000 genomes]
rs7519485	1.00[ASN][1000 genomes]
rs7544099	1.00[ASN][1000 genomes]
rs7550325	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432398	chr1:77707391-77740836	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1005183	chr1:77728990-77949309	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv535010	chr1:77728990-77949309	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv932557	chr1:77730247-77958687	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:77730600-77731400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
2	chr1:77730800-77731400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
3	chr1:77730800-77731400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:77730800-77731400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:77730800-77731400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell

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