Variant report
| Variant | rs12143992 |
|---|---|
| Chromosome Location | chr1:79747133-79747134 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:79744482..79747181-chr12:54772744..54775487,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000161642 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10735756 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs10735757 | 0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs10874032 | 0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11162675 | 0.83[AMR][1000 genomes] |
| rs11162678 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11162684 | 0.81[EUR][1000 genomes] |
| rs12027436 | 0.82[AMR][1000 genomes] |
| rs12127263 | 0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1331707 | 0.82[ASN][1000 genomes] |
| rs1331714 | 0.83[AMR][1000 genomes] |
| rs1331716 | 0.83[AMR][1000 genomes] |
| rs1331723 | 0.83[AMR][1000 genomes] |
| rs1412130 | 0.84[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs1412132 | 0.83[ASN][1000 genomes] |
| rs1412133 | 0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1412135 | 0.82[ASN][1000 genomes] |
| rs1412137 | 0.81[EUR][1000 genomes] |
| rs1412139 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs170613 | 0.86[EUR][1000 genomes] |
| rs2039339 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs228471 | 0.81[AMR][1000 genomes] |
| rs228481 | 0.81[AMR][1000 genomes] |
| rs228488 | 0.82[AMR][1000 genomes] |
| rs3915745 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4650405 | 0.83[AMR][1000 genomes] |
| rs5012068 | 0.81[EUR][1000 genomes] |
| rs6424649 | 0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7515632 | 0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7546136 | 0.83[AMR][1000 genomes] |
| rs7553187 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv491784 | chr1:79146141-79853482 | Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv871182 | chr1:79614989-79822735 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv999471 | chr1:79650363-79774433 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv870657 | chr1:79701220-79890774 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
