Variant report

Variant	rs1214456
Chromosome Location	chr10:90440701-90440702
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1237989	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1653842	0.83[AMR][1000 genomes]
rs1653843	0.83[AMR][1000 genomes]
rs167333	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs170004	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1769690	0.83[AMR][1000 genomes]
rs1769691	0.83[AMR][1000 genomes]
rs1769692	0.83[AMR][1000 genomes]
rs182493	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs186226	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs303505	0.81[AMR][1000 genomes]
rs303506	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs303507	0.81[AMR][1000 genomes]
rs303508	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs303510	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs303516	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs303517	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs372589	0.83[AMR][1000 genomes]
rs376045	0.83[AMR][1000 genomes]
rs377257	0.82[AMR][1000 genomes]
rs378308	0.83[AMR][1000 genomes]
rs378425	0.82[AMR][1000 genomes]
rs385397	0.83[AMR][1000 genomes]
rs387970	0.83[AMR][1000 genomes]
rs388265	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs390414	0.83[AMR][1000 genomes]
rs406102	0.83[AMR][1000 genomes]
rs407433	0.83[AMR][1000 genomes]
rs408387	0.83[AMR][1000 genomes]
rs410033	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs412927	0.83[AMR][1000 genomes]
rs415996	0.82[AMR][1000 genomes]
rs424371	0.83[AMR][1000 genomes]
rs426118	0.83[AMR][1000 genomes]
rs427687	0.83[AMR][1000 genomes]
rs432950	0.83[AMR][1000 genomes]
rs434401	0.83[AMR][1000 genomes]
rs437261	0.83[AMR][1000 genomes]
rs441719	0.83[AMR][1000 genomes]
rs442607	0.83[AMR][1000 genomes]
rs454439	0.83[AMR][1000 genomes]
rs516083	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56390975	0.83[AMR][1000 genomes]
rs814617	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs814619	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs814642	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs866514	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv430254	chr10:90265420-90500520	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1044680	chr10:90316066-90466092	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv540740	chr10:90316066-90466092	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv831941	chr10:90410488-90587332	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1214456	LIPN	cis	Whole Blood	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90440200-90444600	Weak transcription	Stomach Mucosa	stomach
2	chr10:90440600-90441600	Enhancers	HUVEC	blood vessel

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