Variant report

Variant	rs814619
Chromosome Location	chr10:90444270-90444271
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 117 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs10509549	1.00[ASN][1000 genomes]
rs10509550	1.00[ASN][1000 genomes]
rs10509554	1.00[ASN][1000 genomes]
rs10736360	1.00[YRI][hapmap]
rs1169042	1.00[ASN][1000 genomes]
rs1214456	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1237989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1325901	1.00[ASN][1000 genomes]
rs1359581	1.00[YRI][hapmap]
rs1409136	1.00[YRI][hapmap]
rs1653842	1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1653843	1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1653845	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs167333	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs170004	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17336288	1.00[ASN][1000 genomes]
rs1769682	1.00[CHB][hapmap]
rs1769683	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs1769690	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1769691	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1769692	1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1769697	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1769700	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs182493	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs186226	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1980813	1.00[YRI][hapmap]
rs2576167	1.00[YRI][hapmap]
rs2765451	1.00[ASN][1000 genomes]
rs2901950	1.00[YRI][hapmap]
rs303453	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs303454	1.00[ASN][1000 genomes]
rs303456	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs303457	1.00[ASN][1000 genomes]
rs303464	1.00[ASN][1000 genomes]
rs303467	1.00[ASN][1000 genomes]
rs303468	1.00[ASN][1000 genomes]
rs303474	1.00[ASN][1000 genomes]
rs303478	1.00[ASN][1000 genomes]
rs303479	1.00[ASN][1000 genomes]
rs303482	1.00[ASN][1000 genomes]
rs303483	1.00[ASN][1000 genomes]
rs303488	1.00[ASN][1000 genomes]
rs303489	1.00[ASN][1000 genomes]
rs303500	1.00[ASN][1000 genomes]
rs303502	1.00[ASN][1000 genomes]
rs303505	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs303506	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs303507	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs303508	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs303510	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs303516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs303517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs303531	1.00[ASN][1000 genomes]
rs303532	1.00[ASN][1000 genomes]
rs303537	1.00[ASN][1000 genomes]
rs303541	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs365847	1.00[ASN][1000 genomes]
rs367605	1.00[ASN][1000 genomes]
rs372589	1.00[CHB][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs376036	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs376045	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs376261	1.00[CHB][hapmap]
rs377257	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs378308	1.00[CHB][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs378425	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs385397	1.00[CHB][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3858283	1.00[ASN][1000 genomes]
rs387970	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs388265	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs390414	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs390436	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs391683	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs399496	1.00[ASN][1000 genomes]
rs406102	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs407433	1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs407922	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs408387	1.00[CHB][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs410033	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41284088	1.00[ASN][1000 genomes]
rs412927	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs415996	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs416957	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs420381	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs424371	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs426110	1.00[CHB][hapmap]
rs426118	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs426836	0.83[AMR][1000 genomes]
rs427687	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs432950	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs434401	1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs435742	1.00[ASN][1000 genomes]
rs437261	1.00[CHB][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs441719	1.00[CHB][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs442545	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs442607	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs447416	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs450130	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs451949	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs454439	1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs516083	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55713122	1.00[ASN][1000 genomes]
rs56390975	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57260181	1.00[ASN][1000 genomes]
rs61852496	1.00[ASN][1000 genomes]
rs61852497	1.00[ASN][1000 genomes]
rs814617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs814630	1.00[ASN][1000 genomes]
rs814642	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs845134	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs866514	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs875050	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv430254	chr10:90265420-90500520	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1044680	chr10:90316066-90466092	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv540740	chr10:90316066-90466092	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv831941	chr10:90410488-90587332	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs814619	LIPN	cis	Whole Blood	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90440200-90444600	Weak transcription	Stomach Mucosa	stomach
2	chr10:90441400-90449400	Weak transcription	NHEK	skin
3	chr10:90443000-90444600	Weak transcription	Hela-S3	cervix

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