Variant report

Variant	rs61852497
Chromosome Location	chr10:90320588-90320589
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89620441..89622522-chr10:90319312..90321016,2	MCF-7	breast:

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10509549	1.00[ASN][1000 genomes]
rs10509550	1.00[ASN][1000 genomes]
rs10509554	1.00[ASN][1000 genomes]
rs1169042	1.00[ASN][1000 genomes]
rs11816967	1.00[ASN][1000 genomes]
rs1237989	1.00[ASN][1000 genomes]
rs1325901	1.00[ASN][1000 genomes]
rs1573074	1.00[ASN][1000 genomes]
rs1653842	1.00[ASN][1000 genomes]
rs1653843	1.00[ASN][1000 genomes]
rs167333	1.00[ASN][1000 genomes]
rs170004	1.00[ASN][1000 genomes]
rs17334741	1.00[ASN][1000 genomes]
rs17336288	1.00[ASN][1000 genomes]
rs17426488	1.00[ASN][1000 genomes]
rs1769690	1.00[ASN][1000 genomes]
rs1769691	1.00[ASN][1000 genomes]
rs1769692	1.00[ASN][1000 genomes]
rs1769697	1.00[ASN][1000 genomes]
rs1769700	1.00[ASN][1000 genomes]
rs1774977	1.00[ASN][1000 genomes]
rs182493	1.00[ASN][1000 genomes]
rs186226	1.00[ASN][1000 genomes]
rs2765451	1.00[ASN][1000 genomes]
rs303453	1.00[ASN][1000 genomes]
rs303454	1.00[ASN][1000 genomes]
rs303456	1.00[ASN][1000 genomes]
rs303457	1.00[ASN][1000 genomes]
rs303464	1.00[ASN][1000 genomes]
rs303467	1.00[ASN][1000 genomes]
rs303468	1.00[ASN][1000 genomes]
rs303474	1.00[ASN][1000 genomes]
rs303478	1.00[ASN][1000 genomes]
rs303479	1.00[ASN][1000 genomes]
rs303482	1.00[ASN][1000 genomes]
rs303483	1.00[ASN][1000 genomes]
rs303488	1.00[ASN][1000 genomes]
rs303489	1.00[ASN][1000 genomes]
rs303505	1.00[ASN][1000 genomes]
rs303506	1.00[ASN][1000 genomes]
rs303507	1.00[ASN][1000 genomes]
rs303508	1.00[ASN][1000 genomes]
rs303510	1.00[ASN][1000 genomes]
rs303516	1.00[ASN][1000 genomes]
rs303517	1.00[ASN][1000 genomes]
rs365847	1.00[ASN][1000 genomes]
rs367605	1.00[ASN][1000 genomes]
rs372589	1.00[ASN][1000 genomes]
rs376045	1.00[ASN][1000 genomes]
rs377257	1.00[ASN][1000 genomes]
rs378308	1.00[ASN][1000 genomes]
rs378425	1.00[ASN][1000 genomes]
rs385397	1.00[ASN][1000 genomes]
rs387970	1.00[ASN][1000 genomes]
rs388265	1.00[ASN][1000 genomes]
rs390414	1.00[ASN][1000 genomes]
rs391683	1.00[ASN][1000 genomes]
rs399496	1.00[ASN][1000 genomes]
rs406102	1.00[ASN][1000 genomes]
rs407433	1.00[ASN][1000 genomes]
rs407922	1.00[ASN][1000 genomes]
rs408387	1.00[ASN][1000 genomes]
rs410033	1.00[ASN][1000 genomes]
rs41284088	1.00[ASN][1000 genomes]
rs412927	1.00[ASN][1000 genomes]
rs415996	1.00[ASN][1000 genomes]
rs416957	1.00[ASN][1000 genomes]
rs424371	1.00[ASN][1000 genomes]
rs426118	1.00[ASN][1000 genomes]
rs427687	1.00[ASN][1000 genomes]
rs432950	1.00[ASN][1000 genomes]
rs434401	1.00[ASN][1000 genomes]
rs435742	1.00[ASN][1000 genomes]
rs437261	1.00[ASN][1000 genomes]
rs441719	1.00[ASN][1000 genomes]
rs442607	1.00[ASN][1000 genomes]
rs450130	1.00[ASN][1000 genomes]
rs454439	1.00[ASN][1000 genomes]
rs516083	1.00[ASN][1000 genomes]
rs55713122	1.00[ASN][1000 genomes]
rs56390975	1.00[ASN][1000 genomes]
rs57260181	1.00[ASN][1000 genomes]
rs61852496	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61852500	1.00[AFR][1000 genomes]
rs792201	1.00[ASN][1000 genomes]
rs792202	1.00[ASN][1000 genomes]
rs792231	1.00[ASN][1000 genomes]
rs814617	1.00[ASN][1000 genomes]
rs814619	1.00[ASN][1000 genomes]
rs814630	1.00[ASN][1000 genomes]
rs814642	1.00[ASN][1000 genomes]
rs866514	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv533167	chr10:90236197-90341481	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv430254	chr10:90265420-90500520	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1044680	chr10:90316066-90466092	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv540740	chr10:90316066-90466092	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90312200-90342400	Weak transcription	Ovary	ovary
2	chr10:90315400-90322200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:90315400-90342400	Weak transcription	Aorta	Aorta
4	chr10:90317800-90341800	Weak transcription	Adipose Nuclei	Adipose
5	chr10:90319000-90321200	Enhancers	Hela-S3	cervix
6	chr10:90319200-90342000	Weak transcription	Pancreas	Pancrea
7	chr10:90319400-90320600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr10:90320000-90321000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr10:90320000-90321200	Enhancers	NHLF	lung
10	chr10:90320200-90320600	Enhancers	Primary T cells fromperipheralblood	blood
11	chr10:90320200-90320600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr10:90320200-90320600	Enhancers	Osteobl	bone

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