Variant report

Variant	rs12145289
Chromosome Location	chr1:103670122-103670123
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10493993	0.80[AFR][1000 genomes]
rs10493996	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10493997	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10493998	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12073917	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12123238	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs12125356	0.82[AFR][1000 genomes]
rs12135621	0.83[AMR][1000 genomes]
rs12135999	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12140428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17127670	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17464442	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61815054	0.82[AFR][1000 genomes]
rs61815060	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61815063	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6696490	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522922	chr1:103305021-103764640	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv931600	chr1:103548397-104161031	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv498007	chr1:103573857-104107589	Genic enhancers Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	esv2830089	chr1:103615938-103670474	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv526337	chr1:103636607-103704266	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:103660800-103672600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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