Variant report
Variant | rs6696490 |
---|---|
Chromosome Location | chr1:103654326-103654327 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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rs_ID | r2[population] |
---|---|
rs10157415 | 0.97[ASN][1000 genomes] |
rs10493993 | 0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs11164720 | 0.82[ASN][1000 genomes] |
rs11164721 | 0.82[ASN][1000 genomes] |
rs11164734 | 0.81[ASN][1000 genomes] |
rs12075811 | 0.82[ASN][1000 genomes] |
rs12117001 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs12123238 | 0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs12125356 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12130012 | 0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs12131462 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs12135939 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs12140428 | 0.82[AFR][1000 genomes] |
rs12145289 | 0.82[AFR][1000 genomes] |
rs1406137 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs1528202 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1528204 | 0.82[ASN][1000 genomes] |
rs1528205 | 0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs17127592 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs1918883 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs55644203 | 0.91[ASN][1000 genomes] |
rs61815054 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs61815058 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs61818479 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv522922 | chr1:103305021-103764640 | Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
2 | nsv931600 | chr1:103548397-104161031 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
3 | nsv498007 | chr1:103573857-104107589 | Genic enhancers Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
4 | esv2830089 | chr1:103615938-103670474 | Enhancers Weak transcription Active TSS | n/a | n/a | inside rSNPs | diseases |
5 | nsv526337 | chr1:103636607-103704266 | Enhancers Weak transcription Active TSS Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
6 | nsv159319 | chr1:103645616-103655285 | Enhancers Weak transcription Active TSS | n/a | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:103647200-103659400 | Weak transcription | HSMM | muscle |