Variant report

Variant	rs12146448
Chromosome Location	chr11:108384661-108384662
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KDELC2-1	chr11:108384134-108385602	NONHSAT024036

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11212587	1.00[LWK][hapmap]
rs11212680	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212681	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212684	1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212686	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11828459	1.00[LWK][hapmap]
rs12366211	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1943382	1.00[LWK][hapmap];1.00[YRI][hapmap]
rs3092831	1.00[LWK][hapmap]
rs3218670	1.00[LWK][hapmap]
rs3218680	1.00[LWK][hapmap]
rs3741048	1.00[LWK][hapmap]
rs4988125	1.00[LWK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108370400-108408800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:108371800-108406400	Weak transcription	Gastric	stomach
3	chr11:108372000-108401200	Weak transcription	Esophagus	oesophagus
4	chr11:108379800-108389200	Strong transcription	Placenta	Placenta
5	chr11:108380200-108384800	Weak transcription	Brain Anterior Caudate	brain
6	chr11:108381000-108385600	Strong transcription	Liver	Liver
7	chr11:108381000-108408800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr11:108381600-108385400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:108382000-108396000	Weak transcription	Pancreas	Pancrea
10	chr11:108382200-108385000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr11:108382200-108385600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:108382200-108385600	Strong transcription	Rectal Mucosa Donor 31	rectum
13	chr11:108382600-108385600	Strong transcription	K562	blood
14	chr11:108383000-108384800	Weak transcription	Brain Substantia Nigra	brain
15	chr11:108383000-108385400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr11:108383000-108385600	Strong transcription	Rectal Mucosa Donor 29	rectum
17	chr11:108383000-108398400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr11:108383400-108385400	Strong transcription	Lung	lung
19	chr11:108383400-108385600	Strong transcription	Aorta	Aorta
20	chr11:108383400-108386600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr11:108383400-108387000	Weak transcription	Left Ventricle	heart
22	chr11:108383600-108385600	Strong transcription	H1 Cell Line	embryonic stem cell
23	chr11:108383600-108385600	Strong transcription	HSMMtube	muscle
24	chr11:108383600-108386400	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr11:108383800-108385000	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr11:108383800-108385400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:108383800-108386200	Weak transcription	Colonic Mucosa	Colon
28	chr11:108384000-108384800	Strong transcription	GM12878-XiMat	blood
29	chr11:108384000-108385000	Strong transcription	Fetal Kidney	kidney
30	chr11:108384000-108385200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
31	chr11:108384000-108385400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr11:108384000-108385600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr11:108384000-108385600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr11:108384000-108385600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr11:108384000-108390600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr11:108384200-108385000	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr11:108384200-108385200	Strong transcription	Primary T cells from cord blood	blood
38	chr11:108384200-108385400	Strong transcription	Placenta Amnion	Placenta Amnion
39	chr11:108384200-108385600	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr11:108384200-108387600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr11:108384200-108389200	Strong transcription	NHEK	skin
42	chr11:108384400-108385000	Strong transcription	HSMM	muscle
43	chr11:108384400-108385200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr11:108384400-108385200	Strong transcription	Rectal Smooth Muscle	rectum
45	chr11:108384400-108385200	Strong transcription	Stomach Mucosa	stomach
46	chr11:108384400-108385600	Strong transcription	H9 Cell Line	embryonic stem cell
47	chr11:108384400-108385600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr11:108384600-108385600	Strong transcription	HMEC	breast

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