Variant report

Variant	rs12366211
Chromosome Location	chr11:108379649-108379650
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11212680	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212681	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212686	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11212708	1.00[CEU][hapmap]
rs12146448	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12283455	1.00[CEU][hapmap]
rs7945944	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv832263	chr11:108183372-108384391	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108369600-108379800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:108369600-108380800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr11:108369600-108381000	Weak transcription	Liver	Liver
4	chr11:108369600-108382200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:108369600-108384000	Weak transcription	Fetal Kidney	kidney
6	chr11:108370000-108380000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr11:108370400-108408800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr11:108371600-108379800	Weak transcription	Placenta	Placenta
9	chr11:108371800-108406400	Weak transcription	Gastric	stomach
10	chr11:108372000-108381000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:108372000-108401200	Weak transcription	Esophagus	oesophagus
12	chr11:108372200-108381200	Weak transcription	HSMMtube	muscle
13	chr11:108372600-108380000	Weak transcription	NHEK	skin
14	chr11:108372800-108380800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:108377600-108384400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr11:108378400-108380600	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr11:108379000-108380800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr11:108379400-108380200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr11:108379400-108380200	ZNF genes & repeats	K562	blood
20	chr11:108379400-108380800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr11:108379600-108381200	Enhancers	HMEC	breast

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