Variant report

Variant	rs12146545
Chromosome Location	chr11:72363759-72363760
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:72310303..72312102-chr11:72363033..72365890,2	MCF-7	breast:
2	chr11:72335997..72337699-chr11:72363120..72365299,2	K562	blood:
3	chr11:72362926..72365327-chr11:72366143..72368389,2	MCF-7	breast:
4	chr11:72354924..72356941-chr11:72362580..72364598,3	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10793036	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs11235551	0.81[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs11235556	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11235557	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11235558	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11235559	0.81[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1135029	0.80[JPT][hapmap]
rs12276767	0.86[ASN][1000 genomes]
rs12362256	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12363065	1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12576058	1.00[CHB][hapmap]
rs12797368	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12797791	0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12804316	1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1391888	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1467135	0.80[JPT][hapmap]
rs163694	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs1872126	1.00[CHB][hapmap]
rs189332	0.81[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1980089	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs1980090	0.80[JPT][hapmap]
rs2035467	1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2037030	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2306609	0.87[CHB][hapmap]
rs341049	0.81[JPT][hapmap]
rs341051	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs341052	0.81[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs341053	1.00[CHB][hapmap]
rs341060	0.87[ASN][1000 genomes]
rs341061	0.81[CEU][hapmap];1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs341062	0.85[ASN][1000 genomes]
rs341086	0.87[JPT][hapmap]
rs342322	0.87[ASN][1000 genomes]
rs3758934	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3758935	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3758936	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3781913	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs3781916	1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3781939	0.80[JPT][hapmap]
rs3825009	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs401801	0.82[ASN][1000 genomes]
rs455611	0.95[ASN][1000 genomes]
rs456405	0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs458275	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs458575	0.81[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs4943939	0.87[JPT][hapmap]
rs56133505	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61895572	0.86[ASN][1000 genomes]
rs7105428	0.82[ASN][1000 genomes]
rs7119321	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7126790	0.81[ASN][1000 genomes]
rs900613	0.94[CHB][hapmap]
rs900614	0.88[CHB][hapmap]
rs90409	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs907853	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs907854	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs907856	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs907857	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs907858	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs932074	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs932075	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806140	chr11:72268466-72546175	Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
2	esv1832864	chr11:72270965-72389125	Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv832207	chr11:72272750-72469122	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
4	nsv523601	chr11:72281884-72430935	Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
5	nsv825991	chr11:72320642-72385221	Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
6	esv3394774	chr11:72320884-72694077	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72354600-72365000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:72355000-72363800	Weak transcription	Fetal Brain Female	brain
3	chr11:72361400-72364000	Enhancers	Fetal Muscle Leg	muscle
4	chr11:72361800-72363800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:72361800-72379400	Weak transcription	Brain Angular Gyrus	brain
6	chr11:72362600-72364000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:72362600-72364000	Weak transcription	Fetal Brain Male	brain
8	chr11:72363400-72365200	Enhancers	K562	blood
9	chr11:72363400-72366000	Enhancers	Brain Anterior Caudate	brain
10	chr11:72363400-72369400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:72363600-72364600	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr11:72363600-72365000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:72363600-72365600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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