Variant report

Variant	rs1391888
Chromosome Location	chr11:72364629-72364630
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:72310303..72312102-chr11:72363033..72365890,2	MCF-7	breast:
2	chr11:72341496..72343582-chr11:72364594..72367336,2	MCF-7	breast:
3	chr11:72335997..72337699-chr11:72363120..72365299,2	K562	blood:
4	chr11:72362926..72365327-chr11:72366143..72368389,2	MCF-7	breast:
5	chr11:72168860..72170475-chr11:72364322..72366473,2	MCF-7	breast:
6	chr11:72352579..72354601-chr11:72363980..72365561,2	K562	blood:

Variant related genes	Relation type
ENSG00000255808	Chromatin interaction
ENSG00000186642	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10793036	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs11235551	0.81[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs11235556	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11235557	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11235558	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11235559	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1135029	0.80[JPT][hapmap]
rs12146545	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12276767	0.86[ASN][1000 genomes]
rs12362256	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12363065	0.91[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12576058	1.00[CHB][hapmap]
rs12797368	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12797791	0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12804316	1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1467135	0.80[JPT][hapmap]
rs163694	0.87[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs168175	0.87[EUR][1000 genomes]
rs1872126	1.00[CHB][hapmap]
rs189332	0.96[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1980089	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs1980090	0.80[JPT][hapmap]
rs2035467	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2037030	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2306609	0.88[CEU][hapmap];0.87[CHB][hapmap]
rs341049	0.81[JPT][hapmap]
rs341051	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs341052	0.85[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs341053	1.00[CHB][hapmap]
rs341060	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs341061	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs341062	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs341086	0.87[JPT][hapmap]
rs342322	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3758934	0.83[AMR][1000 genomes]
rs3758935	0.82[ASN][1000 genomes]
rs3758936	0.82[ASN][1000 genomes]
rs3781913	0.88[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3781916	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3781939	0.80[JPT][hapmap]
rs3825009	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs401801	0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs455611	0.95[ASN][1000 genomes]
rs456405	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs458275	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs458575	0.81[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs4943939	0.87[JPT][hapmap]
rs56133505	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61895572	0.86[ASN][1000 genomes]
rs7105428	0.82[ASN][1000 genomes]
rs7119321	0.95[ASN][1000 genomes]
rs7126790	0.81[ASN][1000 genomes]
rs900613	0.88[CEU][hapmap];0.94[CHB][hapmap]
rs900614	0.89[CEU][hapmap];0.88[CHB][hapmap]
rs90409	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs907853	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs907854	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs907856	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs907857	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs907858	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs932074	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs932075	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806140	chr11:72268466-72546175	Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
2	esv1832864	chr11:72270965-72389125	Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv832207	chr11:72272750-72469122	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
4	nsv523601	chr11:72281884-72430935	Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
5	nsv825991	chr11:72320642-72385221	Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
6	esv3394774	chr11:72320884-72694077	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72354600-72365000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:72361800-72379400	Weak transcription	Brain Angular Gyrus	brain
3	chr11:72363400-72365200	Enhancers	K562	blood
4	chr11:72363400-72366000	Enhancers	Brain Anterior Caudate	brain
5	chr11:72363400-72369400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:72363600-72365000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:72363600-72365600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:72363800-72365000	Enhancers	Spleen	Spleen
9	chr11:72363800-72365200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:72363800-72365200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:72363800-72365200	Enhancers	Fetal Brain Female	brain
12	chr11:72363800-72365400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:72363800-72365800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
14	chr11:72363800-72368000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:72364000-72365000	Enhancers	Fetal Brain Male	brain
16	chr11:72364000-72365000	Bivalent Enhancer	Fetal Muscle Leg	muscle
17	chr11:72364000-72365200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr11:72364000-72365200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
19	chr11:72364200-72365400	Enhancers	Brain Germinal Matrix	brain
20	chr11:72364400-72365000	Bivalent Enhancer	Fetal Intestine Large	intestine
21	chr11:72364400-72368200	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr11:72364400-72370400	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr11:72364600-72365800	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr11:72364600-72367400	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr11:72364600-72367400	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr11:72364600-72368000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr11:72364600-72368000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr11:72364600-72368000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links