Variant report

Variant	rs12147249
Chromosome Location	chr14:79176154-79176155
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10148040	1.00[YRI][hapmap]
rs10148134	0.91[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12147248	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17757467	0.81[CEU][hapmap]
rs2241441	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs35813445	0.82[AFR][1000 genomes]
rs985956	0.80[CEU][hapmap]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79165000-79176800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr14:79165000-79181000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:79170800-79176600	Weak transcription	Brain Hippocampus Middle	brain
4	chr14:79174800-79176200	Weak transcription	Brain Substantia Nigra	brain
5	chr14:79175000-79177600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr14:79175600-79177000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr14:79175600-79177200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:79175600-79177200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr14:79175800-79176600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr14:79175800-79176600	Enhancers	Brain Anterior Caudate	brain
11	chr14:79175800-79176800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr14:79175800-79177200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:79175800-79177200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr14:79175800-79178000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr14:79176000-79176200	Enhancers	Fetal Kidney	kidney
16	chr14:79176000-79189000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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