Variant report

Variant	rs2241441
Chromosome Location	chr14:79175334-79175335
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10137516	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10148040	0.84[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10148134	1.00[CHB][hapmap];0.93[CHD][hapmap];0.84[JPT][hapmap];0.81[LWK][hapmap];1.00[YRI][hapmap];0.94[ASN][1000 genomes]
rs12147248	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs12147249	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs12431582	0.88[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12880185	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12880418	0.81[GIH][hapmap];0.89[LWK][hapmap];0.80[MEX][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs17757467	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28505980	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28728169	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35035363	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35813445	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7148462	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8003598	0.84[CEU][hapmap];0.88[GIH][hapmap];0.88[MEX][hapmap];0.85[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs985956	0.90[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.93[TSI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs988014	0.90[ASW][hapmap];0.84[CEU][hapmap];0.87[CHB][hapmap];0.83[GIH][hapmap];0.83[LWK][hapmap];0.96[MEX][hapmap];0.88[MKK][hapmap];0.84[TSI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2241441	COQ6	cis	cerebellum	SCAN
rs2241441	TMEM90A	cis	cerebellum	SCAN
rs2241441	GTF2A1	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79165000-79176800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr14:79165000-79181000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:79170800-79176600	Weak transcription	Brain Hippocampus Middle	brain
4	chr14:79171800-79175600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:79171800-79175600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr14:79174800-79176200	Weak transcription	Brain Substantia Nigra	brain
7	chr14:79175000-79177600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr14:79175200-79175800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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