Variant report

Variant	rs988014
Chromosome Location	chr14:79184350-79184351
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10137516	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10148040	1.00[CEU][hapmap];0.87[CHB][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10148134	0.83[ASW][hapmap];0.81[CEU][hapmap];0.87[CHB][hapmap];0.86[GIH][hapmap];0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12431582	0.87[CHB][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs12880185	0.84[AMR][1000 genomes]
rs12880418	0.81[ASW][hapmap];0.91[CHB][hapmap];0.84[AMR][1000 genomes]
rs17757467	0.92[CEU][hapmap];0.87[CHB][hapmap];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2241441	0.90[ASW][hapmap];0.84[CEU][hapmap];0.87[CHB][hapmap];0.83[GIH][hapmap];0.83[LWK][hapmap];0.96[MEX][hapmap];0.88[MKK][hapmap];0.84[TSI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs28505980	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28728169	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35035363	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35813445	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7148462	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8003598	0.84[CEU][hapmap];0.90[GIH][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs985956	1.00[ASW][hapmap];0.92[CEU][hapmap];0.87[CHB][hapmap];0.83[CHD][hapmap];0.90[GIH][hapmap];0.83[LWK][hapmap];0.96[MEX][hapmap];0.85[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs988014	GTF2A1	cis	parietal	SCAN
rs988014	TMEM90A	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79176000-79189000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr14:79176600-79188600	Weak transcription	Brain Anterior Caudate	brain
3	chr14:79177000-79188400	Weak transcription	Brain Angular Gyrus	brain
4	chr14:79177200-79187400	Weak transcription	Brain Germinal Matrix	brain
5	chr14:79177200-79188000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr14:79181600-79188600	Weak transcription	Brain Inferior Temporal Lobe	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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